Daria Iakovishina
Work
iBinom, researcher.
In our team we aim to create a medical application for the exome analysis. I work on the development of new features, such as copy number variation detection, generalization of the disease databases, association of the symptoms with corresponding variants, identification of the best enrichment based on the symptoms, development of methods for determining the smart coverage, sanger confirmation on bio-informatics level. Also I am responsible for creating clinical reports in collaboration with the medical doctor.
Talks and presentations
- Poster on EMBL "In-depth overview of CNV prediction tools for exome sequencing data" 2015
- Poster AMP "Comparative analysis of multiple variant calling pipelines"
- Oral talk in NGS 2015 (Moscow)
- Oral talk at Recomb 2015, Warsaw Poland.
- Oral talk at Lipari summer school
- Oral talk at ANALCO 2014. "Clump Combinatorics, Automata, and Word Asymptotics"
- Poster at ISMB 2013 in Berlin "SV-Bay: structural variant detection in cancer genomes based on the Bayesian approach with correction for the GC-content and mappability"
- Oral talk at ABS4NGS in Paris "SV-Bay: structure variation detection in the cancer genome"
Publications
- FREEC for exome analysis in progress with Valentina Boeva
- "In-depth overview of CNV prediction tools for exome sequencing data" upcoming May 2016 with T.Tarinova et al.
- "SV-Bay: structural variant detection in cancer genomes based on the Bayesian approach with correction for the GC-content and mappability" –Bioinformatics journal. Jan 2016
- Mirielle Regnier and Billy Fang and D. Iakovishina "Clump Combinatorics, Automata, and Word Asymptotics", ANALCO, 2014, pages 62-73,http://dx.doi.org/10.1137/1.9781611973204.6